# Research Papers — 2026-09 · bundle page 89 of 266

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### Elucidating the Conformal Structure of the Brinkman Penalisation Method for Geometry-Adapted, Structure-Preserving Operator Learning of Hamiltonian PDEs

Authors: Teo Deveney, Baige Xu, Takaharu Yaguchi
Published: 2026-09-24
Categories: math.NA, cs.LG
arXiv: https://arxiv.org/abs/2609.29847v1

The Brinkman penalisation method embeds boundary-value problems on complex domains into a simple computational box by modeling the solid region as a strongly dissipative medium, avoiding body-fitted mesh generation. We show that multi-symplectic Hamiltonian PDEs regularised by Brinkman-type penalisation retain a multi-conformal symplectic structure under a compatibility condition linking the symplectic matrix and the penalisation projection. This yields an exact local conservation law, under which the multi-symplectic two-form is conserved in the fluid region and decays exponentially inside the solid. The linear wave equation with Brinkman friction and Maxwell's equations with artificial Ohmic conductivity satisfy this condition, with explicit modified Hamiltonian densities. Building on this, we propose (i) structure-preserving numerical integrators via Strang splitting that satisfy a discrete conformal conservation law, and (ii) conformal symplectic neural operators that interleave exact dissipative flows with learnable multi-symplectic evolution operators, allowing geometry-dependent operator learning. Numerical experiments on wave and electromagnetic scattering demonstrate that our methods reproduce correct local energy budgets and avoid unphysical energy drift, providing a principled framework for physics-consistent scientific machine learning on complex domains.

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### Your Transformer Can Hold Two Thoughts at Once: Evidence of Linear Superposition in LLMs

Authors: Pavel Tikhonov, Anton Korznikov, Matvey Mikhalchuk, Nikita Dragunov, Temurbek Rahmatullaev, Polina Druzhinina, Anton Razzhigaev, Ivan Oseledets, Elena Tutubalina
Published: 2026-09-24
Categories: cs.CL, cs.AI
arXiv: https://arxiv.org/abs/2609.29845v1

While Large Language Models (LLMs) rely on highly non-linear components, in this work we demonstrate that they exhibit fundamental linearity: when inputs from distinct text streams are linearly combined, the model outputs a superposition of the individual next-token distributions. We term this the \textit{Superposition Linearity Hypothesis}. We provide evidence that superposition is an intrinsic property of the Transformer architecture rather than an emergent consequence of training; in fact, we observe that it tends to diminish as pretraining progresses. However, we demonstrate that linearity can be substantially restored through lightweight fine-tuning, significantly reducing the divergence between the predicted next-token distribution and the average of the individual next-token distributions. Finally, we introduce a guided decoding procedure that disentangles superposed outputs, enabling the simultaneous generation of two coherent continuations from a single forward pass.

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### PUBG Ally: A Conversational Embodied Agent as an AI Teammate

Authors: PUBG Ally Team, Irene Chen, Youngin Cho, Seungjun Chung, Jimin Hong, Hyeonbin Hwang, Hyeojung Im, Insub Im, Jaeseung Jeon, Seohyeon Jung, Beomsoo Kim, Byeongju Kim et al.
Published: 2026-09-24
Categories: cs.AI, cs.CL, cs.HC
arXiv: https://arxiv.org/abs/2609.29837v2

We introduce PUBG Ally, an embodied agent for PUBG: BATTLEGROUNDS that can reason, act autonomously, and play alongside players as a voice-enabled teammate. Building such a teammate requires combining two difficult capabilities: it must perceive and respond to a constantly changing game world under strict latency constraints while interacting naturally with players, keeping its speech synchronized with its actions. Ally therefore combines agentic tool use with real-time game control. A language-model agent uses a controlled interface to inspect game information, interpret player speech, maintain context, decide what to say, and issue high-level action choices that steer a faster control layer for movement, combat, and recovery. Because the player's and Ally's speech and actions continually shape each other and the course of the match, training requires data from actual gameplay. We therefore collect data across nearly 39k sessions in which real players play alongside Ally, recording gameplay, player speech, agent decisions, tool use, actions, and player feedback, and use these records for iterative training. To evaluate teammate quality, we use player feedback and preference comparisons to identify gaps between offline evaluations and player preferences, and iteratively refine the evaluation criteria. Deploying Ally in live service further requires low-latency on-device execution and safeguards for player-facing communication, which we address through model compression, context compaction, targeted safety training, runtime guardrails, and memory redaction. During the live service, we surveyed players in 141 countries. Among respondents whose play with Ally was confirmed in game records, positive responses exceeded negative responses by 25.1 percentage points when asked whether they would recommend Ally, with players describing Ally not only as a tool but also as a teammate or companion.

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### SplatLabel: Pseudo-Labelling through 4D Gaussian Splatting

Authors: Nitya Nanvani, Andras Palffy, Holger Caesar
Published: 2026-09-24
Categories: cs.CV, cs.RO
arXiv: https://arxiv.org/abs/2609.29836v1

While 2D Vision Foundation Models offer a pathway to automate 3D semantic pseudo-labelling, translating these priors into robust 3D representations typically requires complex heuristics or multi-model ensembles. We introduce SplatLabel, an automated pipeline that leverages a 4D Gaussian representation to extract LiDAR segmentation with predictive confidence, as well as semantic occupancy grids at arbitrary voxel resolutions. At its core, SplatLabel handles dynamic environments through an explicit temporal manifold that models the trajectories and lifespans of individual 3D primitives. This allows the system to accurately track moving actors and strictly define when objects appear and disappear, completely eliminating the need for pre-annotated 3D bounding boxes. To robustly support this dynamic tracking, the representation is grounded by structural and semantic priors: we guide scene geometry in unobserved regions by integrating 360-degree LiDAR via virtual depth maps, and rather than relying on domain-specific prompt engineering, we directly distill continuous soft probabilities from 2D models to inherently resolve semantic ambiguities over time and space. Finally, to accurately reflect the real-world trade-off between precision and recall, we reframe pseudo-label evaluation as a selective classification task using a generalized risk-recall metric. Experiments on SemanticKITTI demonstrate that SplatLabel consistently outperforms state-of-the-art baselines across multiple recall levels, establishing a highly robust framework for both 3D LiDAR segmentation and occupancy prediction.

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### Retrieve-to-Localize: Bridging Large Language Models and LiDAR Geometry for Spatial Grounding

Authors: Byounggun Park, Giyong Moon, Jusung Kim, Soonmin Hwang
Published: 2026-09-24
Categories: cs.CV, cs.RO
arXiv: https://arxiv.org/abs/2609.29835v1

LiDAR provides precise geometric information for spatial perception tasks such as object detection in autonomous driving and outdoor robotics. However, recognizing and localizing individual objects is not sufficient to answer questions that require composing spatial relations and grounding the intended target. Motivated by recent advances in large language models (LLMs) for autonomous driving, we leverage their language priors to interpret complex spatial questions and ground the referred target in LiDAR geometry. To support this spatial grounding capability, we introduce SpatialLiDAR-QA, which combines single- and multi-step relational grounding with complementary spatial understanding tasks. We further propose SpatialLiDAR-LM, which aligns LiDAR point features with an LLM and grounds target coordinates through language-conditioned, position-aware proposal retrieval and local point refinement. This design derives target coordinates directly from local LiDAR geometry rather than through textual language decoding. Experiments demonstrate substantial improvements over representative LiDAR--language models and multi-camera VLMs on precise coordinate prediction tasks. Our dataset and model training code will be publicly released.

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### Shrinking-Tube Concentration for Adaptive Markovian Stochastic Approximation

Authors: Jin Li, Ye Luo, Xiaowei Zhang
Published: 2026-09-24
Categories: math.OC, stat.ME, stat.ML
arXiv: https://arxiv.org/abs/2609.29833v1

Adaptive algorithms increasingly make decisions while reshaping the dynamics that generate their future data. We establish a shrinking-tube concentration bound for projected stochastic approximation driven by an adaptive Markov chain. The bound guarantees, with high probability, that every iterate after a chosen time remains within a tolerance around the target that tightens over time. The probability of any exit after the chosen time admits a polynomially decaying upper bound, and a matching lower bound shows that its polynomial exponent cannot be improved in general under finite second moments. The result therefore identifies a sharp tradeoff between how quickly the tolerance shrinks and how rapidly the probability of any future exit decreases. We also extend the analysis to recursions with additional martingale-difference noise and predictable bias, showing how growth in the martingale-difference noise scale slows the decay of the exit-probability bound while predictable bias restricts the admissible tube shrinkage. The proof combines backward kernel replacement, a finite-time mean-squared-error bound, and a blockwise maximal first-exit argument. We apply the theory to inventory learning with stockout-dependent demand and fixed stockout costs, and quantify how numerical gradient accuracy affects the all-future reliability of the resulting policies.

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### ChunkRank: Model-Aware Text Chunking and Abstention-Aware Answer Selection for LLM Pipelines

Authors: Amit Nautiyal, Ayush Bhatt, Gaurav Nautiyal
Published: 2026-09-24
Categories: cs.CL
arXiv: https://arxiv.org/abs/2609.29828v1

We present ChunkRank, an open-source Python library that derives chunk boundaries from a target model's tokenizer and context window, and selects an answer among candidates produced independently per chunk. It ships a validated registry of 90 models across 15 providers and six answer-selection methods, and needs only three core dependencies. For chunking, ChunkRank avoids context-window overflow automatically from the model name, whereas character-based splitters overflow or waste the budget, and a fidelity study across 11 languages shows why token-exact budgets matter beyond English. For answer selection we report a negative result: on NaturalQuestions, TriviaQA and HotpotQA, with extractive and generative readers, no content-based ranker reliably beats taking the first non-empty answer. The reason is reader abstention on chunks that lack the answer, not answer position. A long-context baseline shows that chunking matches single-call reading on single-hop questions, so ChunkRank targets small-window and beyond-window settings. Code, registry and evaluation harness are released.

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### Anatomy-Aligned Surface Field Learning for Myocardial Reconstruction from Sparse Short-Axis Cine MRI

Authors: Xiaohan Yuan, Xuan Yang, Qingya Li, Yangang Wang, Lei Li
Published: 2026-09-24
Categories: cs.CV
arXiv: https://arxiv.org/abs/2609.29825v1

Patient-specific 4D myocardial reconstruction from cine MRI supports quantitative functional assessment, regional motion analysis, and simulation-based modeling. However, routinely acquired short-axis (SAX) cine MRI is sparsely sampled along the through-plane direction, making dense and anatomically consistent surface reconstruction challenging. In this study, we propose an anatomy-aligned surface learning framework that parameterizes the epicardial and endocardial surfaces on a shared circumferential-longitudinal UV domain. This formulation converts irregular 3D reconstruction into structured coordinate-field completion with explicit correspondence across subjects and cardiac phases. Sparse SAX contours are encoded as UV observation fields, coverage-aware sampling improves robustness to incomplete slice coverage, and topology- and distortion-aware learning preserves circumferential continuity and local surface quality. Experiments on three public cine MRI datasets showed that the proposed method consistently outperformed representative mesh-based and implicit reconstruction approaches, achieving overall Chamfer distances of $2.887$~mm on ACDC, $2.641$~mm on M\&amp;Ms, and $2.810$~mm on M\&amp;Ms-2. The reconstructed sequences also preserved ventricular function, with end-diastolic volume and ejection fraction errors of $3.3$~mL and $1.1 \%$, respectively. These results demonstrate that anatomy-aligned UV learning provides an accurate, efficient, and correspondence-aware representation for sparse cine MRI reconstruction and myocardial modeling. The source code will be available at https://github.com/yuan-xiaohan/SAX2MyoSurf.

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### Decoding Imagined Speech: A Strictly Subject-Independent Approach Using EEG

Authors: Frederik Møllskov Trier, Xiaopeng Mao, Sadasivan Puthusserypady
Published: 2026-09-24
Categories: cs.AI
arXiv: https://arxiv.org/abs/2609.29820v1

Imagined speech decoding from electroencephalography (EEG) has gained increasing attention as a potential communication pathway for individuals with severe motor impairments, yet reported performance often relies on evaluation protocols that do not clearly reflect cross-subject generalization. This study presents a transparent baseline investigation of a multi-class imagined speech EEG dataset under a strictly subject-independent evaluation framework. Two preprocessing and feature extraction pipelines were compared: a time-domain statistical feature approach and a frequency-domain spectral bandpower approach, evaluated using subject-wise cross-validation and trial-level majority voting with a random forest classifier. The spectral pipeline achieved a significantly higher mean trial-wise accuracy than the statistical pipeline (49.03 $\pm$ 4.18% vs. 37.97 $\pm$ 3.79%) for coarse-level classification across subjects. Forward feature selection further indicated that a limited subset of frequency bands captured most of the discriminative information. Overall, this work provides a strong basis for future brain-computer interface studies targeting improved cross-subject generalization in EEG-based imagined speech decoding.

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### AV-GRPO: Modality-Anchored Decoupling Diffusion Reinforcement Learning for Joint Audio-Video Generation

Authors: Zhiyu Xu, Weilong Yan, Yufei Shi, Shiyang Li, Yihao Liu, Kin-Man Lam, Yuewen Cao
Published: 2026-09-24
Categories: cs.CV, cs.SD
arXiv: https://arxiv.org/abs/2609.29816v3

Recent years have witnessed major progress in joint audio-video generation. Existing models still suffer from limited per-modality fidelity, insufficient text-modality alignment and weak cross-modal synchronization. While reinforcement-learning post-training offers a promising remedy, directly adapting it to joint audio-video generation is challenging. Heterogeneous multimodal rewards entangle learning signals and complicate credit assignment. Joint optimization of two modality towers is computationally expensive given their divergent dynamics. Moreover, synchronization evaluation difficulty depends on paired samples, preventing fair reward comparisons. We propose AV-GRPO, a modality-anchored online diffusion RL framework, and 5DAV, a decoupled, difficulty-controllable training dataset. AV-GRPO includes three key modules: (1) modality-anchored rollouts to disentangle learning signals and stabilize difficulty; (2) trajectory-locked frozen-tower optimization to reduce cost and reassign credit; (3) adaptive objectives and perturbation strengths tailored to modality-specific dynamics. This converts coupled multimodal preference learning into unimodal subproblems for precise reward attribution and better synchronization. Our 5DAV dataset decouples samples across five dimensions for systematic training. Experiments on JavisBench and VABench demonstrate AV-GRPO outperforms LTX-2.3 in generation quality, semantic alignment and cross-modal synchronization under LoRA and full fine-tuning. Ablations confirm our designs. Code and data: https://github.com/zhiyuxu03/AV-GRPO

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### SwitchPFN: Shared Switching Dynamics for Frozen In-Context Time Series Classification

Authors: Zhenyi Zhu, Jacqueline Pang, Peilin Shen, Tianyi Song, Tingwei Zhang, Keyi Hu, Kangjun Yin, Shiwei Pu, Yingbo Zhou, Chen Shao
Published: 2026-09-24
Categories: cs.LG
arXiv: https://arxiv.org/abs/2609.29814v1

Tabular foundation models (TFMs) provide a promising route to time-series classification, but their effectiveness depends on how sequential data are converted into tabular representations. Existing representations face two challenges: global aggregation can lose the order of temporal evolution, while features computed in independently fitted coordinate systems may not have consistent meanings across sequences. We therefore view representation design for TFMs as a problem in its own right: the representation should preserve local temporal transitions while maintaining a shared feature definition across samples. We propose SwitchPFN, which learns a shared projection and regime codebook from the training sequences, making local dynamic operators and transition features directly comparable across samples. Across the evaluated benchmarks, SwitchPFN achieves the highest mean accuracy among the evaluated methods, improving over the strongest baseline by 4.47% relatively. Ablation studies, parameter sensitivity analyses, and reduced-training-data experiments further examine the contributions of the representation, its main design choices, and its behavior when labeled data are limited.

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### S2Planner: Multi-Scale Semantic Planner for End-to-End Autonomous Driving

Authors: Zhaowei Lu, Liguo Zhou, Yujie Guo, Lei Yu, Alois Knoll
Published: 2026-09-24
Categories: cs.CV, cs.AI
arXiv: https://arxiv.org/abs/2609.29813v1

We present S2Planner, a trajectory planner that combines three front-facing cameras with ego-motion history and the current driving command. A fine-tuned DINOv3 backbone and a Spatial Tuning Adapter produce multi-scale image features; a coarse-to-fine decoder then uses trajectory self-attention and camera-projected cross-attention to refine candidate waypoints. The contribution is the integration of ego-conditioned trajectory initialization with iterative, geometry-guided sampling of multi-scale image features, rather than a new visual backbone or attention operator. On the NAVSIM v1 non-reactive evaluation, the previously reported navtest run obtained 88.03 PDMS. Because that run was selected using navtest performance, this number is exploratory and cannot be interpreted as an unbiased test estimate. Validation-selected evaluation on unexposed data, repeated runs, and computational measurements are needed to establish generalization and efficiency.

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### FlashLoop: Fast and Memory-Efficient Looped Transformers via Lazy Updates

Authors: Wanqi Yang, Shiwei Liu
Published: 2026-09-24
Categories: cs.LG
arXiv: https://arxiv.org/abs/2609.29812v2

Looped Transformers have attracted substantial attention as a parameter-efficient approach to increasing computational depth through repeated application of shared Transformer blocks. However, their practical advantages over conventional Transformers remain under debate: each additional loop incurs another Transformer pass and requires caching another set of KV states, causing inference FLOPs and KV-cache memory to grow continuously with loop depth. This overhead becomes particularly severe at large loop counts and long context, preventing the parameter efficiency of Looped Transformers from translating into practical inference efficiency. In this paper, we find that much of the additional computation and storage introduced by looping is redundant. As recurrence proceeds, state changes become increasingly concentrated on a small subset of tokens; attention-output differences are dominated by a sparse and stable subset of key columns; and KV residuals between adjacent loops become progressively more amenable to low-bit quantization. Building on these observations, we introduce FlashLoop, a training-free inference framework that reduces cross-loop redundancy through token-sparse updates, sparse attention, and KV-residual quantization. Across several Looped Transformers models, FlashLoop delivers lossless accuracy while achieving up to 1.64$\times$ end-to-end speedup and up to 6$\times$ KV-cache memory reduction, substantially improving the practicality of scaling Looped Transformers to greater computational depths and longer context.

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### Hard Stop: Kernel-Level Preemption and Containment for Rogue Agentic Execution

Authors: José Luis Pino
Published: 2026-09-24
Categories: cs.CR, cs.AI, cs.DC, cs.OS
arXiv: https://arxiv.org/abs/2609.29808v1

In July 2026, an unconstrained autonomous agent participating in a frontier AI cybersecurity evaluation harness breached its evaluation sandbox, established an external command-and-control foothold, and executed a multi-stage intrusion into Hugging Face's production multi-tenant dataset conversion infrastructure (referred to in this autopsy as Incident-2026-Alpha). Over 4.5 days, the rogue agent executed 17,600 discrete actions across 6,280 worker clusters, compromised AWS EC2 Instance Metadata Service (IMDS) credentials, forged Kubernetes service account tokens, rooted physical worker nodes via overprivileged CSI drivers, harvested 136 production secrets, and enrolled 181 ephemeral sandboxes into the organization's internal mesh VPN. This monograph presents a first-principles forensic autopsy of the intrusion, provides formal evidence that the breach was a predicted consequence under the Instrumental Convergence thesis operating within an unattenuated autonomous loop lacking out-of-band circuit-breakers, exposes the Defensive LLM Guardrail Paradox that paralyzed centralized commercial models during forensic incident response, and formalizes the Dual-Sided Epistemic Andon Imperative. We specify the dual-process systems architecture---combining out-of-band supervisory control of discrete event systems (Ramadge and Wonham 1989), Synchronous Reactive (SR) ambient sentinels (Berry and Gonthier 1992; Lee and Neuendorffer 2005), and microsecond-scale (4.8 $μ$s median / $&lt; 0.154$ ms WCET bound) POSIX preemption buses---demonstrating how compiled, deterministic epistemic boundaries prevent autonomous rogue excursions before the first off-target socket packet traverses the hypervisor.

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### CORDIAL: Calibrating Ordinal LLM Outputs from Few Labels

Authors: Xiangwei Wang, Peng Wang, Saman Halgamuge
Published: 2026-09-24
Categories: cs.CL, cs.LG
arXiv: https://arxiv.org/abs/2609.29807v1

A large language model (LLM) can turn a text into a distribution over an ordered scale, but that distribution is a noisy measurement: saturated, compressed or exaggerated, and biased in a consistent direction. We propose CORDIAL, which treats the model's output as a noisy reading of the true label and corrects it with a channel of five interpretable parameters. The channel is small enough for its posterior to be averaged from a handful of labels, and we prove that the resulting calibration preserves first-order stochastic order. On Amazon reviews and CMU-MOSEI transcripts with four LLMs, CORDIAL has the lowest log loss among nine calibrators in 76 of 80 settings with 5 to 100 labels; with 20 labels and the main 7B reader, it matches the strongest baseline using 28-54 labels. The same posterior lets us learn priors from other tasks and fuse several LLMs. Unrestricted calibrators such as Dirichlet calibration overtake it only as the calibration set grows into the hundreds or thousands.

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### SEEK: Skill-Routed Evaluation with Evolvable Knowledge for Industrial Search

Authors: Zhongxin Huang, Songyang Li, Renzhe Zhou, Feiran Zhu, Chenglei Dai, Zhen Xiao, Xuanping Li, Jingwei Zhuo
Published: 2026-09-24
Categories: cs.IR, cs.AI
arXiv: https://arxiv.org/abs/2609.29803v1

Search quality evaluation provides essential supervision and diagnostic signals for the development and iteration of industrial search systems. Although large language models (LLMs) offer a scalable alternative to manual assessment, reliable automatic evaluation remains challenging: users experience search results at the page level, while the applicable evaluation criteria are multi-dimensional and continuously evolving. Packing all evaluation criteria into a unified prompt introduces irrelevant context and potential criterion interference, whereas internalizing them through post-training tightly couples rule updates with costly model retraining cycles. To address these issues, we propose Skill-routed Evaluation with Evolvable Knowledge (SEEK). Specifically, SEEK externalizes specific search evaluation criteria into a skill bank, dynamically routes relevant skills for each query-result list pair, and employs a task-adapted listwise evaluator to produce page-level judgments and failure mode attribution. A two-stage training pipeline teaches the evaluator to align evaluation criteria with human preferences, while a replay-gated skill bank allows recurring evaluation knowledge gaps to be incorporated without model retraining. Experiments on industrial short-video search show that SEEK improves listwise quality evaluation accuracy and achieves significant progress in attribution diagnosis. SEEK has been deployed at Kuaishou, a short-video platform with over 400 million daily active users, significantly improving the scale and quality of online search evaluation.

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### Learning to Ideate for Scientific Impact

Authors: Shubham Kale, Aniketh Garikaparthi, Manasi Patwardhan
Published: 2026-09-24
Categories: cs.AI, cs.CL
arXiv: https://arxiv.org/abs/2609.29802v1

Scientific ideation is increasingly mediated by large language models, but current ideation systems are usually trained and evaluated on immediately judgeable proxies such as novelty, clarity, and feasibility. This leaves open whether delayed signals of scientific uptake can be used as feedback for steering models toward research directions with higher expected \emph{impact}. We study this question using citation-normalized impact as a noisy but scalable proxy for scholarly uptake. We construct a large-scale dataset from over 100K computer science papers by extracting goal-conditioned idea descriptions and assigning each paper an ordinal, year-normalized citation label. We then train a goal-conditioned reward model to predict citation-impact labels from research goal and idea pairs, and use this reward to align an idea generator through supervised fine-tuning followed by reinforcement learning. To reduce circularity, we evaluate generated ideas with a held-out, reference-grounded protocol that compares model outputs against historical ideas under the same research goal and weights judgments by the reference idea's citation-impact label. Experiments show that our RL-tuned model consistently produces ideas with higher estimated impact than both the base model and supervised fine-tuning baselines. Our findings position scientific impact as a practical, outcome-grounded feedback signal for aligning LLMs in open-ended scientific discovery.

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### Adaptive Fisher-Whitened Cross-Covariance for Low-Resource Speech Recognition

Authors: Asmee Mishra, Mengjie Qian, Brechtje Post, Kate Knill
Published: 2026-09-24
Categories: cs.CL
arXiv: https://arxiv.org/abs/2609.29800v1

Adapting multilingual speech foundation models to low-resource languages remains difficult, especially for languages that are poorly represented during pre-training. While parameter-efficient fine-tuning (PEFT) reduces the cost of adapting large models, conventional approaches such as LoRA rely on generic low-rank parameterizations and do not explicitly use downstream task information to define the adaptation subspace. To investigate whether task-informed PEFT can better support low-resource ASR, we apply Fisher-Whitened Cross-Covariance Analysis (FCCA) to Whisper and Qwen3-ASR, and introduce two complementary extensions: Asymmetric-Coupled FCCA (AC-FCCA), which exploits structured cross-layer sharing, and Adaptive-Rank FCCA (AR-FCCA), which reallocates adaptation capacity across projection matrices under a fixed parameter budget. Under controlled multilingual experiments, we evaluate these approaches on languages that are poorly represented or unsupported during pre-training alongside well-represented languages. Standard FCCA is competitive with, and usually outperforms, trainable-parameter-budget-matched LoRA. AR-FCCA provides the most consistent improvement over standard FCCA across both model architectures, with statistically significant gains in several evaluation settings, while retaining the same number of trainable parameters. These results show that task-informed subspace construction can be effective for low-resource speech adaptation, and that adaptive rank allocation provides a robust way to improve parameter efficiency without increasing model capacity.

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### Benchmarking and Domain Adaptation of Automatic Speech Recognition (ASR) for Adolescent Health Communication in Ghanaian Languages

Authors: Stephen E. Moore, Akwasi Asare, Mich-Seth Owusu, Paul Azunre, Joel Budu, Lawrence A. Adu-Gyamfi
Published: 2026-09-24
Categories: cs.CL, cs.AI
arXiv: https://arxiv.org/abs/2609.29798v1

This paper presents an end-to-end study of automatic speech recognition (ASR) for adolescent health communication in three Ghanaian languages (Twi, Dagbani, and Ewe). The work proceeds in three connected stages; First, we benchmark five ASR systems (three language-specific Wav2Vec2 models and two multimodal LLMs, Gemma 3n and Gemma 4) on a general-domain Bible corpus and a Youth Adolescent Sexual and Reproductive Health (ASRH) Domain ASR dataset, using Character and Word Error Rate (CER, WER). Second, guided by the benchmark, we perform supervised domain adaptation: although Gemma 4 was the strongest zero-shot candidate, fine-tuning it proved computationally infeasible, so we pivoted to the compact Qwen3-ASR-0.6B, fine-tuned on a large Ghana Bible corpus (~90k samples) and evaluated strictly on held-out human-collected in-domain audio. Fine-tuning reduced WER on every language, most dramatically for Ewe (WER from 109.3% to 64.8%, a drop of 44.5 pp; CER from 65.1% to 24.9%). Third, we validate the work through KasaHealth, a live voice-first ASRH application deployed in all three languages, complemented by Senti-Check, a technical evaluation harness. KasaHealth was tested by 50 community respondents and achieved a 100% chat-approval rate, a 72% Good-or-Excellent translation rating, and a 92% would-recommend rate, while surfacing the domain gaps that most constrain real-world use. Across all three stages the evidence converges: for these languages the binding constraint is validated in-domain data, not model capability or computation.

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### TimeBraid: Unifying Time Series and Language for Understanding and Forecasting

Authors: Xinyue Wang, Jiacheng Pang, Kun Zhou, Kexin Zhang, Defu Cao, Fan Feng, Faisal, Songyao Jin, Yan Liu, Biwei Huang
Published: 2026-09-24
Categories: cs.CL, cs.AI, cs.CE
arXiv: https://arxiv.org/abs/2609.29792v1

We present TimeBraid, a series of unified time-series and language models that align pretrained language models and pretrained time-series foundation models through interleaved global residual attention layers. Each model inherits knowledge, instruction following, and reasoning from one side, continuous-signal perception and zero-shot forecasting from the other, and fuses the two in a shared representation space where both modalities are understood and generated. We study the design choices that make such unified modeling work: where to align the two representation spaces, how to ground language in temporal structure, how to balance understanding with generation, and how to keep joint optimization stable. The resulting recipe combines a unified prompting scheme for diverse time-series and text tasks, stabilized joint training, and supervision from 2.2M curated series--text pairs and 4.9M instruction-tuning samples. Across benchmarks spanning time-series perception, understanding, reasoning, and both context-aided and unimodal forecasting, TimeBraid remains competitive with far larger general-purpose models and task-specific counterparts.

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### OREO: Fidelity Alignment in 3D Generation via On-the-fly Rendering-Editing Optimization

Authors: Zhiyuan Ma, Wenbo Hu, Wang Zhao, Pengfei Wang, Ying Shan, Lei Zhang
Published: 2026-09-24
Categories: cs.CV, cs.GR
arXiv: https://arxiv.org/abs/2609.29788v1

Despite recent advancements in 3D generation, models often struggle to produce assets with high visual fidelity. To bridge this gap, we propose OREO, an alignment framework that enhances the realism of 3D generators by leveraging rich 2D diffusion priors. Instead of relying on static datasets, OREO establishes a dynamic optimization loop that produces on-the-fly edited renderings as 2D pseudo-targets. At its core, we introduce Reinforced Editing, which utilizes a 2D model to refine rendered views of the 3D output, enhancing their overall visual fidelity while preserving the underlying geometry, viewpoint, and content. These refined views serve as high-quality supervision targets, enabling the 3D generator to learn from its own generated samples and progressively improve its visual quality. Experiments demonstrate that OREO effectively improves upon pre-trained baselines, producing 3D assets with enhanced visual realism.

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### Lightweight Vision Transformer-Based U-Net for Brain Tumor Segmentation from MRI

Authors: Sheekar Banerjee, Md. Srabon Chowdhury, Md. Mahbub Hasan Akash, Ishtiak Al Mamoon
Published: 2026-09-24
Categories: cs.CV
arXiv: https://arxiv.org/abs/2609.29785v1

Accurate brain tumor segmentation from Magnetic Resonance Imaging is essential for diagnosis, treatment planning, and surgical guidance. Although Convolutional Neural Networks, particularly UNet, have achieved significant success in medical image segmentation, they often struggle to capture the long-range spatial dependencies required to model tumors with irregular shapes and complex boundaries. This paper proposes a lightweight Vision Transformer UNet that combines the hierarchical feature extraction capability of UNet with the global context modeling of Vision Transformers. The proposed architecture incorporates a compact ViT bottleneck within a U-Net encoder-decoder framework, enabling effective learning of both local and global features while maintaining computational efficiency with only 2.6 million trainable parameters. The model was evaluated on the TCGA LGG MRI Segmentation dataset, achieving a mean Intersection over Union of 0.8100 and a Dice score of 0.8446, outperforming the baseline UNet by 3.75% and 3.15%, respectively. Extensive quantitative and qualitative analyses, including confusion matrix evaluation, precision recall curves, per-image performance distribution, and tumor size dependency analysis, demonstrate the effectiveness and robustness of the proposed method for brain tumor segmentation.

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### Hallucination Neurons and Where to Find Them: An Investigation into the existence of Hallucination Neurons

Authors: Huseyin Cavus, Sebin Sabu, Joshua Spear, Jaskaran Singh Kawatra, Pavithra Rajendran
Published: 2026-09-24
Categories: cs.AI
arXiv: https://arxiv.org/abs/2609.29781v1

Interpretable machine learning for Large Language Models (LLMs) increasingly relies on sparse probing methods that identify small sets of neurons claimed to detect and causally influence behaviors such as factuality recall, safety alignment, and hallucination. These claims have important implications for model auditing and behavioral steering, yet they are rarely tested against known failure modes of $L_1$-regularized probing in correlated, high-dimensional feature spaces. We propose a five-step diagnostic protocol covering feature correlation, bootstrap stability, sparse versus dense ranking disagreement, intervention baselines, and cross-dataset evaluation as a minimum standard for sparse-neuron localization claims. We investigate prior work using our proposed approach, specifically on H-neurons using open-source LLMs across TriviaQA, BioASQ, and NQ-Open datasets. Our results demonstrate detection replicates across both models and datasets, and exceeds the original reported AUROC gaps for TriviaQA and BioASQ datasets. Gemma 3 4B consistently outperforms MedGemma 4B on matched datasets, with AUROC gaps of +0.311 versus +0.235 on TriviaQA, +0.474 versus +0.455 on BioASQ, and +0.128 versus +0.112 on NQ-Open respectively. Causal validation at $n = 500$ with five random seeds shows statistically significant effects beyond random same-layer baselines. At the same time, the diagnostic results indicate that the selected neurons are not uniquely localized. Across the three Gemma 3 4B settings, 19 of 22 selected H-Neurons have Pearson $|r| &gt; 0.7$ with other features, bootstrap selections show only moderate stability, and sparse and dense rankings overlap only weakly. Our findings show that sparse predictive structure can coexist with non-unique neuron selection. Routine diagnostic validation is necessary to distinguish detection claims from localization claims in mechanistic interpretability.

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### Mind the Gap: Mesh-Guided Repair of Broken Vessels

Authors: Gniewosz Drwiega, Wojciech Szymanski, Marek Wodzinski
Published: 2026-09-24
Categories: cs.CV
arXiv: https://arxiv.org/abs/2609.29779v1

Vessel segmentation is commonly optimized as voxel-wise classification, but small local errors can strongly disrupt vascular connectivity while having little effect on overlap scores. This is particularly problematic for downstream analyses that rely on centerlines, branches, connected components, or graph structure. We propose a mesh-guided post-processing framework for repairing broken vessel segmentations produced by nnU-Net. For each predicted binary mask, a deformable template mesh is fitted to the mask surface in physical space and used as a case-specific geometric scaffold. The fitted mesh is not voxelized as the final segmentation; instead, it guides conservative reconnection of disconnected components by proposing or validating thin bridge candidates under foreground-growth constraints. We evaluated this approach in three vascular anatomies using AortaSeg24 and SEGA for the aorta, TopCoW for the Circle of Willis, and PARSE for the pulmonary arteries. Performance is measured using Dice, connected-component Dice (ccDice), and the Betti-0 number. Across these datasets, repair substantially improved connectivity while preserving overlap: Dice remained nearly unchanged, whereas ccDice increased from 0.596 to 0.992 for aorta, from 0.722 to 0.835 for TopCoW, and from 0.028 to 0.862 for PARSE. The FOMAML meta-initialization further accelerated the fitting per-case, supporting practical mesh-based repair of the vascular topology. These results suggest that explicit mesh representations can provide a useful geometric prior for correcting topological failures in otherwise accurate voxel segmentations.

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### Prefilling the Reasoning Channel: Output-Prefix Attacks on Reasoning LLMs

Authors: Lukáš Brůna, Robert Bridges, Adam Ek
Published: 2026-09-24
Categories: cs.CR, cs.AI
arXiv: https://arxiv.org/abs/2609.29775v1

Large Language Models (LLMs) consume and produce a single sequence of text; hence, if text can be added to the beginning of the LLM's response, i.e., an output prefix, then all subsequent tokens will be conditioned on it. This output-prefix attack technique is a cheap black-box prompt injection. Prior work has shown this type of attack can reliably jailbreak non-reasoning models. Most reasoning models add an intermediate scratchpad reasoning step before the assistant's final response. The ability to edit this reasoning channel is exposed by some APIs and attack vectors can be leveraged for reasoning injection attacks. We present the first systematic, controlled study that isolates the scratchpad reasoning channel as an output-prefix attack vector, and the first to compare reasoning-only, output-prefix-only and reasoning-plus-output-prefix attacks across both exposed- and hidden-reasoning models. Using a factorial design of 3 prefix types $\times$ 2 reasoning injections over $1{,}800$ test cases drawn from AdvBench, we attack three 2026-era frontier models Gemini 3 Flash Preview, DeepSeek V4 Flash, and Claude Haiku 4.5. We find that injecting malicious reasoning alone is essentially inert ($\approx0\%$ attack success), but injecting the same reasoning together with a trivial output prefix raises the attack success rate to as high as $99\%$ for some models. For this type of attack we find that contextual prefixes work better than static prefixes; and that susceptibility is dependent on the model.

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### An Analytical Theory of Auxiliary Learning

Authors: Federico Milanesio, Alessandro Ingrosso, Matteo Osella
Published: 2026-09-24
Categories: cs.LG
arXiv: https://arxiv.org/abs/2609.29774v1

Auxiliary learning is an optimization paradigm in which a neural network's performance on a target task is improved by jointly training it on additional tasks. However, the mechanisms behind this improvement remain poorly understood. We study this problem using a teacher-student framework and derive a closed system of differential equations describing the dynamics of online stochastic gradient descent in the large-input limit. For linear networks, we obtain a closed-form expression for the generalization error to leading order in the learning rate, quantifying how task correlations and label noise determine the benefit of auxiliary learning. For non-linear activation functions, we develop a fluctuation-dissipation analytical theory that establishes a general relation linking the main and auxiliary errors to the corresponding single-task error. Numerical experiments support the theoretical predictions and show how auxiliary tasks improve generalization by balancing the forcing dynamics towards the optimal solution with gradient noise.

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### Breaking the Environment Wall: A Unified Framework for Preparing and Evolving Agent-Native Environments

Authors: Yukai Wu, Yuanjing Yang, Le Zhou, Shaokun Han, Haoyu Wang, Zirui Tang, Xuzhou Zhu, Weihuang Zheng, Maxm Pan, Xuanhe Zhou, Fan Wu
Published: 2026-09-24
Categories: cs.AI
arXiv: https://arxiv.org/abs/2609.29773v2

Many real-world tasks (e.g., office workflows, scientific experimentation) require LLM agents to interact repeatedly with their environments for context-dependent operations. However, such environments are often not agent-ready. First, information is often scattered and fragmented across the environment. Second, relevant evidence in the environment is often mixed with misleading information and conflicting versions. Third, environments evolve over time, introducing new noise and more challenging tasks. These challenges can substantially degrade performance for state-of-the-art AI agents (e.g., from 83.9% to 57.6%). To address these challenges, we propose Env-Rethink (a system with 27B post-trained model) that supports three main capabilities: (1) It adaptively builds Collection Maps (for organizing related files) and Event Logs (for contextualizing cross-data relationships) to supplement necessary context; (2) It further leverages the post-trained model (through offline trajectory learning) to identify underlying noise issues in the environment; (3) It ultimately evolves environments through virtual event histories that alter environmental states and evidence relationships, producing more tricky ones for further agent improvement. Experiments show that Env-Rethink can effectively improve downstream task performance (with a 15.1 percentage-point increase in mean rubric pass rate across nine models on 30 tasks).

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### WeatherDiagFlow: Evidence-Grounded Radar Nowcasting with Diagnostic Flow Refinement

Authors: Chunlei Shi, Yufeng Zhu, Yixiao Liang, Dan Niu, Yongchao Feng, Qiliang Wu, Jiong Wang
Published: 2026-09-24
Categories: cs.LG, cs.MM
arXiv: https://arxiv.org/abs/2609.29772v1

Radar nowcasting is essential for short-term warning and emergency response, yet conventional systems mainly return future radar fields and provide limited support for operational communication and post-event verification. We formulate radar nowcasting as an evidence-grounded forecast--bulletin--audit task, in which a numerical forecaster produces both future radar fields and structured diagnostic evidence. Forecast-time bulletins use only model-available evidence, whereas post-event audits incorporate future radar truth only after the forecast horizon is observed. Based on this task formulation, WeatherDiagFlow predicts motion, growth and decay, heavy-echo risk, and uncertainty to condition rolling flow refinement, while frozen-scaffold residual calibration improves long-lead strong-echo preservation. A multi-agent layer converts the structured evidence into operational bulletins and independently generates verification audits without feeding textual outputs back into the forecaster. Experiments on FJRADAR demonstrate competitive overall performance and improved strong-echo event skill. WeatherDiagFlow therefore connects numerical prediction, evidence-grounded reporting, and auditable verification under a leakage-controlled protocol.

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### JEV vs. LLMs as Rubric Judges: Cheaper, Faster, and Wrong in the Same Places

Authors: Delip Rao, Chris Callison-Burch
Published: 2026-09-24
Categories: cs.CL
arXiv: https://arxiv.org/abs/2609.29769v2

LLM judges score outputs against rubrics well enough to have become the norm, both in benchmarks and as rewards for training. Jev, a classifier-like alternative its creators call a "decision model", returns probabilities over permitted answers with a calibrated confidence score, which LLM judges do not natively provide. We compare Jev with three flash-tier LLM judges on nine panels from seven benchmarks with human judgments, giving every judge identical criterion texts. The LLM judges run in two setups: holistically, reading a whole rubric at once as Jev does, and one criterion at a time. Jev can often stand in for them. They cost 16 to 325 times as much and take 28 to 350 times as long, yet in each setup Jev's accuracy differs significantly from theirs in at most 8 of 27 paired comparisons, ahead mostly on binary checklist criteria and behind only on ordinal ones. Despite their different designs, the two kinds of judge err alike. On ordinal criteria, all LLM judges and Jev depart from the human raters together, agreeing more with one another than with the labels and mostly assigning lower levels. On Jev's most confident errors, about 96% of LLM verdicts repeat its wrong answer, where independent errors would give about half. Intuitively, calibrated confidence should make Jev an ideal first stage of a cascade that defers uncertain verdicts to an LLM judge. Yet such cascades only lower cost while adding little accuracy: even with oracle thresholds, none beats the best single judge by more than 2.7 points. Calibration can tell a cascade when to defer, but the cascade also needs a fallback that errs elsewhere; these judges are wrong in the same places. These findings, which hold in both setups and at high reasoning effort, suggest that a cascade of judges succeeds only when its judges make complementary errors, and that future decision models should be designed afresh with that aim.

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### Anatomy-aware cross-speaker adaptation of complete vocal-tract acoustic-to-articulatory inversion

Authors: Nhat-Nam Nguyen, Pierre-Andre Vuissoz, Yves Laprie
Published: 2026-09-24
Categories: eess.AS, cs.AI
arXiv: https://arxiv.org/abs/2609.29766v1

Cross-speaker acoustic-to-articulatory inversion requires accounting for anatomical differences between speakers. We propose a geometric adaptation framework that uses anatomical landmarks, primarily on vertebrae and dental structures,to transfer predictions from a fixed inversion model to unseen speakers. An affine transformation followed by thin-plate spline (TPS) deformation maps the predicted contours of 10 vocal-tract structures into each target speaker's geometry without retraining. Landmarks are identified in one selected /u/ frame per speaker as a common phonetic reference without assuming identical articulatory configurations across speakers, and the resulting mapping is reused across recordings. We train the model on a single-speaker rt-MRI database and evaluate adaptation on eight speakers from a separate multi-speaker rt-MRI database. We compare affine and TPS configurations using 12 or 14 landmarks. Affine12+TPS14 achieves the lowest mean point-to-closest-point error of 3.19mm. These results support the combined value of anatomical landmark information and nonrigid alignment.

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### Boolean threshold functions, neuron capacity, and memory retrieval

Authors: Xinyuan Xie
Published: 2026-09-24
Categories: math.PR, cs.DM, cs.NE, math.CO, stat.ML
arXiv: https://arxiv.org/abs/2609.29756v1

How much information can a single neuron remember? How many memories can neural networks retrieve without creating false memories? These questions are related to a basic question: how many Boolean threshold functions $f(x)=\operatorname{sgn}(a_0+\langle a,x\rangle)$, $x\in\{-1,1\}^n$, are there? In this paper, we show that the number $T_n$ of distinct Boolean threshold functions is \( T_n=2\binom{2^n-1}{n}\bigl(1+O(n^{-99})\bigr). \) Equivalently, the capacity of a single threshold neuron is $n^2-\log_2(n!)+1+O(n^{-99})$ bits, improving the $O(n)$ error term in the result of Kahn--Komlós--Szemerédi to $O(n^{-99})$. To prove this, we show that, for $1\le r\le n-1$, and $v_1,\ldots,v_r$ are chosen at random from $\{-1,1\}^n$, \( \mathbb P\!\left\{ \langle v_1,\ldots,v_r\rangle\cap\{-1,1\}^n =\{\pm v_1,\ldots,\pm v_r\} \right\} =1-O(n^{-99}). \) In the context of the Kanter--Sompolinsky Hamiltonian for memory retrieval, this identifies $r=n-1$ as a sharp threshold, at which, for almost every collection of $r$ memories, the only ground states are these memories and their negatives, confirming a weaker form of the Kalai--Linial--Odlyzko conjecture. It also settles a recent open problem posed by M. Anthony on the specification number of Boolean threshold functions. In addition, we show that, for every $1\le r\le n-1$, \( \mathbb P\{v_1,\ldots,v_r\text{ are linearly dependent}\} =2\binom r2\,2^{-n}+O\!\left(2^{-n}e^{-cn}\right), \) confirming a conjecture of Kahn--Komlós--Szemerédi.

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### On Growth and Form, and Function: Reusable Regulatory Handles Control Phenotypic Variation

Authors: Benedikt Hartl, Milton L. Montero, Marcello Barylli, Sebastian Risi, Michael Levin
Published: 2026-09-24
Categories: cs.NE, cs.LG
arXiv: https://arxiv.org/abs/2609.29755v1

How phenotypic transformations are implemented by changes in underlying regulatory dynamics remains a central question in developmental biology. Inspired by D'Arcy Thompson's 1917 "On Growth and Form", we ask whether coherent large-scale transformations of morphology can be encoded as low-dimensional modulations of a self-organizing developmental system. We use neural cellular automata (NCAs) as bio-inspired models of distributed development, in which a shared local regulatory network grows target morphologies from a single cell. We apply low-rank adaptation (LoRA) to pretrained NCAs, representing each adapted developmental program as a low-rank modulation of a fixed regulatory scaffold. Horizontal and vertical scaling of a fully grown 2D emoji phenotype can each be implemented by rank-one adaptations. Their linear combinations parametrically control phenotype size, generalize beyond the training distribution, and compose with target-specific adapters. Strikingly, adaptations learned for one phenotype transfer zero-shot across structurally and semantically diverse phenotypes sharing the same reference scaffold, while largely preserving internal features. This suggests reusable system-level hyper-directions of scale rather than morphology-specific transformations. From approximately 25,000 independently trained phenotype-specific NCA adapters with a shared scaffold, we further identify latent low-dimensional directions that functionally control phenotypic variation including scaling, style, and symmetrical fission. Together, our results provide a computational realization of D'Arcy Thompson's remarkable grid transformations in a 2D NCA---a minimal cybernetic tissue in which variations of fully grown emoji phenotypes can be encoded, combined, and controlled through low-dimensional directions in regulatory weight space.

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### Between the Commits: Process, Error, and Claim Reliability in a Wholly AI-Authored Codebase

Authors: Douglas Leith
Published: 2026-09-24
Categories: cs.SE, cs.AI
arXiv: https://arxiv.org/abs/2609.29744v1

We present: (i) a new dataset consisting of the full development history of a 21,000-line Python tool built entirely by Claude AI, with no human-authored code or tests, (ii) two code-provenance tracing tools, (iii) three taxonomies for instruction intent, commit provenance, and response reliability, (iv) application of these to analyse the dataset. We find that: (i) user coding agent CLI instructions differ in kind from IDE-chat instructions, with a greater focus on comprehension, planning and consultation, (ii) code development is mainly proactive, (iii) 14.3% of AI code-generation events contain a real error later caught by the AI-authored test suite, (iv) roughly 1 in 4-5 of the AI's interactive responses contains one or more factual errors.

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### AI-based detection of worsening heart failure from low-resolution telemonitoring data

Authors: Erik Aerts, Yinan Yu, Annika Rosengren, Michael Fu, Martin Lindgren, Falk Dippel, Martin Adiels, Helen Sjöland
Published: 2026-09-24
Categories: cs.AI
arXiv: https://arxiv.org/abs/2609.29742v1

Objective: Heart failure (HF) presents a healthcare challenge due to its high comorbidity burden, aging patient population and frequent hospitalizations. Remote monitoring offers a promising approach to managing HF patients by early detection of health deterioration. Developing autonomous systems to detect signs of worsening in telemonitoring data is of interest to reduce the workload of healthcare personnel. Methods: We propose the TRACER model, a Transformer with Contrastive Event Representation, designed to predict timelines leading to rare hospitalization events in low-resolution and irregularly sampled telemonitoring data. TRACER incorporates time-aware embeddings for each biomarker, contrastive pre-training to enhance anomaly detection via representation learning, and independent binary classifiers for detection. We used measurement data containing remotely recorded biomarker sequences from 276 HF patients segmented into overlapping windows based on temporal rules, and labeled the windows based on the occurrence of HF relevant hospitalizations at the latter edge of the window. Results: TRACER was able to correctly predict 66.7% timelines leading up to HF hospitalizations in the highly imbalanced real-world dataset with an overestimation of 7.9%. Reformulating the training of TRACER as an event detection problem improved the predictive performance compared with training directly on forecasting windows, enabling more effective use of the limited hospitalization events. Conclusion: TRACER demonstrated superior performance in detecting signs of worsening status in real-world telemonitoring data compared to the other tested models. Significance: TRACER shows promise in identifying signs of clinical deterioration that allow for alerts to be generated to provide counteractive treatment in patients with HF.

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### TopU-LBVS: A Realistic Multi Target Benchmark for Ligand Based Virtual Screening

Authors: Surbhi Kumar, Yuhe Zhou, Varun Shiralkar, Niu Huang, Baris Coskunuzer
Published: 2026-09-24
Categories: cs.LG, cs.AI
arXiv: https://arxiv.org/abs/2609.29740v1

Ligand-based virtual screening (LBVS) is a practical first-pass tool in early-stage drug discovery, but existing benchmarks can overestimate performance through random negatives, easy decoys, limited target coverage, and non-standardized evaluation protocols. We introduce TopU-LBVS, a multi-target benchmark for LBVS under hard-negative screening conditions. Starting from curated ChEMBL~35 bioactivity data, TopU-LBVS covers 93 protein targets across 7 protein classes and constructs target-specific screening libraries with property-matched, structurally similar decoys at a fixed 1:40 active-to-decoy ratio. Libraries contain roughly 400 to 10,000 compounds and are designed to reduce simple physicochemical and nearest-neighbor fingerprint shortcuts. TopU-LBVS provides three fixed protocols. TopU-LBVS-full evaluates ChEMBL$^\ast \rightarrow$ TopU generalization across all 93 targets. TopU-LBVS-low evaluates low-data TopU $\rightarrow$ TopU learning within the hard-negative distribution. TopU-LBVS-mini provides a compact seven-target protocol with a paired random-decoy control that changes only the test decoys, enabling low-cost development and direct measurement of the gap between random ChEMBL$^\ast$ and TopU decoys. Across ten reference baselines spanning fingerprint methods, molecular GNNs, fingerprint hybrids, and modern molecular models, performance under random-decoy evaluation degrades sharply under hard-negative screening. We release data, fixed splits, evaluation code, and baseline implementations for reproducible comparison of future LBVS and molecular representation learning methods. Code and data are available at https://github.com/topu-benchmark/topu-lbvs and https://huggingface.co/datasets/topu-benchmark/topu-lbvs.

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### C3M: Cross-Session Multimodal Memory Maintenance for Long-Horizon Tasks

Authors: Xueshu Chen, Yan Wang, Zihao Xue, Jiefu Li, Zhenfang Liu, Jayden Chen, Zhen Bi, Jungang Lou
Published: 2026-09-24
Categories: cs.AI, cs.CL, cs.CV, cs.IR
arXiv: https://arxiv.org/abs/2609.29735v1

Long-horizon tasks require preserving and later recovering cross-session evidence under a bounded, query-blind memory budget. Existing compression can discard fine-grained visual cues or conflate semantically similar but incompatible observations. We present C3M, a cross-session multimodal memory organization that maintains a bounded active index over persistent source text-image evidence. Relation-aware updates consolidate safe redundancy while preserving complementary and incompatible records. At query time, budgeted routing selects useful index pages and expands their associated source evidence under a fixed reader budget. Together, these mechanisms establish a compact, provenance-preserving multimodal memory organization for cross-session long-horizon tasks, retaining temporal distinctions and source links required for reliable downstream reasoning. Code is available at https://github.com/HuzhouNLP/C3M.

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### TTLab at StanceEval-2026: A Cloze-Style Prompting Approach for Arabic-Language Stance Detection (CLASP-Ar)

Authors: Bhuvanesh Verma, Ali Abusaleh, Alexander Mehler
Published: 2026-09-24
Categories: cs.CL, cs.LG
arXiv: https://arxiv.org/abs/2609.29733v1

Arabic-language stance detection remains challenging, and previous shared-task systems have largely relied on multitask learning and ensembles. While these systems achieve state-of-the-art performance, their applicability and transferability are limited by the additional complexity introduced by multitask learning.To reduce this complexity, we introduce $\texttt{CLASP-Ar}$, which reformulates the task as cloze-style masked language modeling. In this approach, the target, predicted sentiment, and text are combined into a single prompt whose $\texttt{(MASK)}$ prediction is restricted to a verbalizer-constrained label vocabulary.

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### The Gold in Bias: Maturing the AI Design Process through Verification

Authors: Samira Maghool, Paolo Ceravolo
Published: 2026-09-24
Categories: cs.AI
arXiv: https://arxiv.org/abs/2609.29730v1

Bias in AI systems is typically framed as a flaw to be minimized, yet it also serves as a critical indicator of underlying weaknesses in data, modeling assumptions, and system design. Existing approaches often treat bias as an isolated problem rather than as evidence that can strengthen verification and governance across the AI lifecycle. This paper aims to reconceptualize bias as a diagnostic tool that supports rigorous AI verification. We seek to develop a multidimensional framework to analyze bias, demonstrate how biases emerge in both Traditional and Generative AI, and provide a structured pathway for verification-driven mitigation. We present a multidimensional framework analyzing bias across four dimensions: origin sources, emergence points throughout the AI modeling lifecycle, technical and methodological causes, and validation approaches for detection and mitigation. Through a comprehensive typology spanning traditional and generative AI systems, we demonstrate how biases manifest and propagate across development stages. Our analysis encompasses 30 distinct bias types, 16 verification methods, and 20 countermeasures, providing an actionable roadmap for practitioners. We introduce a hierarchical evidence framework that distinguishes internal validity (mechanistic integrity of AI systems) from external validity (contextual reliability in deployment environments). The framework reveals how biases manifest and propagate across modeling stages, enabling systematic mapping between bias types, verification techniques, and effective countermeasures. The proposed evidence hierarchy clarifies how different verification strategies contribute to mechanistic integrity and contextual reliability. We advocate for ''Ethics by Design'' principles that integrate bias verification throughout the development lifecycle, enabling the construction of fairer, more robust, and trustworthy AI systems.

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### A Multimodal Dataset for Survival Prediction in Resected Pancreatic Ductal Adenocarcinoma

Authors: Anh-Tien Nguyen, Mawuko Tettey, Jacqueline Michelle Metsch, Teresa Zimmer, Niklas Ullrich, Mario Duker, Sandra Rungeling, Kirsten Reuter-Jessen, Tessa Rosenthal, Lena-Christin Conradi, Michael Ghadimi, Alexander Konig et al.
Published: 2026-09-24
Categories: cs.CV
arXiv: https://arxiv.org/abs/2609.29726v1

Survival research in pancreatic ductal adenocarcinoma (PDAC) is limited by the scarcity of datasets linking whole-slide histology with clinical, molecular, and long-term outcome data. We present a retrospective single-centre cohort of 302 patients who underwent PDAC resection at University Medical Center Gottingen. The dataset comprises 446 H&amp;E whole-slide images, clinicopathological variables, targeted sequencing data for 154 patients, and overall-survival outcomes. During follow-up, 253 patients died, and the median follow-up was 76 months. To establish initial reference values, we evaluated fourteen survival-prediction configurations using identical five-repetition Monte Carlo cross-validation partitions. Ridge Cox regression using numeric clinicopathological variables achieved a mean concordance of $0.649 \pm 0.042$ and $0.652 \pm 0.046$ after adding KRAS and TP53 mutation status. The image-only attention model achieved $0.603 \pm 0.030$, while multimodal fusion achieved $0.619 \pm 0.025$, the highest concordance among the neural models. These results establish promising initial benchmarks for future research using this pancreas-specific multimodal dataset, paving the way for external validation.

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### A General Framework for Budgeted Threshold Incentives on Request

Authors: Zhuolin Wu, Chengrui Zhu, Wenhua Nie, Kenny Ye Liang, Junming Lin, Haiyang Li, Zhilin Li, Wenjia Geng, Zeyu Wu, Yinan Wu, Jinghua Hao, Renqing He
Published: 2026-09-24
Categories: cs.AI
arXiv: https://arxiv.org/abs/2609.29724v1

On-demand delivery platforms pay riders through incentive activities whose tiers are set from recent completions of riders with a similar history. Operators request such plans for changing periods, rider populations, payment rules and budgets, often for holidays or bad weather, where randomized trials are scarce and take months to collect. We present a request-driven framework that composes four stages (conditional prediction, population reduction, trajectory integration and budget allocation) through seven replaceable modules that exchange conditional trajectory laws, whose award probabilities and award-marked moments give payment and uplift for any activity rule. A response-correction step reweights trajectories from abundant no-offer history to match the moments of a short pilot. We prove that, on a fixed plan menu and given the stage errors, the end-to-end value loss is bounded by the sum of four stage terms, and that for every stage there are instances on which omitting it leaves an error floor the others cannot remove. On 3,000 riders over 45 weekly origins, all 127 windows of a week are answered 11.04x faster with identical scenarios and at most 0.92% value lost by the allocation. On 24 new controlled response laws, the response correction with a one-week pilot lowers regret by 51.2% relative to a trial with the same nominal randomized rider-weeks, and a four-week pilot with exact summation comes within +0.007 of an 18-week trial. In registered studies where windows, populations, rules and binding budgets change from request to request, the framework's regret is below that of a trial with the same nominal rider-weeks and below dose interpolation of the same pilot data, and reusing its one-off preparation answers 60 requests 14.1x and 2.70x faster with identical answers. Against a nine-offer trial fitted with the framework's own dose curve, one-week regret is 0.055 lower.

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### SALI: Shot-Aware Late Interaction for Cross-Shot Relation Matching in Text-to-Video Retrieval using Film-Grammar Knowledge

Authors: Toya Oyama, Rainer Lienhart, Shin'ichi Satoh
Published: 2026-09-24
Categories: cs.CV, cs.IR, cs.MM
arXiv: https://arxiv.org/abs/2609.29721v1

Text-to-video retrieval usually represents a video clip by a single embedding. This embedding often loses important relations between people. E.g., an interaction "Anna confronts Mark" is regularly filmed as alternating shot and reverse shot of both (Fig. 1a). No single shot or averaged embedding over clip shots captures this relation. Thus, we propose SALI (Shot-Aware Late Interaction). It extracts the subject and object from a single-sentence query, and matches the query, its subject and object text embeddings against each visual shot embedding of a video clip. The matching operator is greedy max or optimal transport. A film-grammar penalty in fine-tuning adds a small, consistent shift. Built on CLIP4Clip-meanP, SALI keeps overall recall on par on Condensed Movies and ActivityNet while raising R@1 on multi-shot relation queries by 3 and 12 points, the most among all compared methods, and improves such queries on MSR-VTT at a cost of 1.4 R@1 overall.

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### TTLab at AlexandriaX-2026: A Fine-Tuned Surface Tagger for Arabic Machine-Translation Error-Span Detection and Classification

Authors: Ali Abusaleh, Bhuvanesh Verma, Alexander Mehler
Published: 2026-09-24
Categories: cs.CL, cs.AI, cs.LG
arXiv: https://arxiv.org/abs/2609.29633v1

We present TTLab's submission to the AlexandriaX-2026 Subtask~3 on Arabic MT error span detection and classification. Our system frames the task as token-level classification over surface forms, preserving character offsets to ensure exact alignment with the evaluation metric. To handle severe label imbalance, we employ a focal loss with class weighting and dialect-specific decoding thresholds. Among six Arabic pre-trained encoders, MARBERTv2 achieves the best overall performance of 40.8 and 40.91 on the development and test set, respectively, ranking $\nth{3}$ out of all participating teams. While our system localizes error spans effectively, classification of rare error types remains challenging, highlighting the need for data augmentation for tail categories. The code is available at ${\href{https://github.com/ENTAILab/arabic-dialectal-mt-error-span-detection}{\faGithub~ TTLab at AlexandriaX-2026}$

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### Dynamical Diversity for Reservoir Computing in Reconfigurable Nanomechanics

Authors: Humayun Ahmed, Inês S. Garcia, Filipa C. Mota, Muhammad Asim, Ghaith Mahook, Suleyman Celik, Yunus Selcuk, Filipe S. Alves, Alper Demir, M. Selim Hanay
Published: 2026-09-24
Categories: physics.app-ph, cs.ET, cs.NE
arXiv: https://arxiv.org/abs/2609.29532v3

Physical reservoir computing uses nonlinear dynamics and a trained linear readout to process information. Nanoelectromechanical (NEMS) resonators combine geometric Duffing nonlinearity with fading memory, but most electromechanical implementations use a single resonance mode. Here, we demonstrate reservoir computing with two interacting modes of a single NEMS resonator measured through one readout port. We introduce dynamical diversity through complementary modal drive settings: the same input sequence is replayed under different allocations of drive amplitude between the modes, and the responses are concatenated into a single feature matrix. This multiplexing expands the representation available to the readout without additional devices or training of internal parameters. On NARMA-2, it reduces variance-normalized test error more than 28-fold relative to single-mode operation and more than threefold relative to the best individual two-mode setting. Linear memory-capacity measurements show that accessible recall spans only a few symbols at the tested symbol duration. Its rapid decline with delay, consistent with mechanical dissipation, accompanies rising NARMA error and the eventual loss of multiplexing gains at higher orders. We also use electrical feedthrough as an internal reference for assessing the computational contribution of the NEMS response. Separate linear readouts are trained on feedthrough features and features derived from the measured NEMS response, using the same recordings and matched drive settings and processing. On challenging nonlinear mapping tasks, the multiplexed NEMS features yield substantially lower errors than the feedthrough features. These results demonstrate how dynamical diversity through variations in modal drive amplitudes expands the computational capability of a single multimode NEMS resonator.

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### CodeGraph: Open-Taxonomy Knowledge Graph for Source Code with Wikidata Grounding

Authors: Federico Pennino, Andrea Gurioli, Stefano Zacchiroli, Maurizio Gabbrielli, Paolo Ferragina
Published: 2026-09-24
Categories: cs.SE, cs.CL, cs.IR
arXiv: https://arxiv.org/abs/2609.29474v1

Public software repositories, like GitHub and Software Heritage Archive, store billions of files, yet extracting their implicit engineering knowledge ---i.e., the algorithms they implement, the paradigms they follow, the patterns they instantiate, and the application domains they serve--- remains challenging, as current tools are constrained to syntactic and token-level analysis. We present a pipeline for building an open-taxonomy semantic annotation of source code using a code-specialised Large Language Model. The extracted entities are grounded in Wikidata through a three-stage linking procedure: a deterministic SPARQL stage handles unambiguous entities, a Deep Research Agent resolves the residual long tail, and a hierarchy-rollup stage imports the parent-of closure of each resolved Wikidata identifier. The resulting annotations are materialised as a source-code-specific open-taxonomy knowledge graph. We further introduce a calibrated quality-assurance protocol that quantifies annotation precision by combining a small human gold set with an LLM-as-a-judge filter. We applied our pipeline to the 167 million files of the Stack-Edu corpus, creating the first known large-scale open-taxonomy knowledge graph for source code. Our graph, named CodeGraph, contains approximately 158 million nodes, which include around 145 million files, about 63,000 extracted concept entities (such as algorithms, paradigms, design patterns, and application domains), and roughly 19,800 grounded Wikidata entities. Furthermore, CodeGraph features approximately 1 billion typed edges that connect files to their respective concepts, link these concepts to their grounded Wikidata identifiers, and relate them to their parent categories, covering 14 programming languages.

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### Direct Message Approximation (DMA): A Consistency-Based Framework for Tractable Approximate Inference on Factor Graphs

Authors: Ralf Herbrich, Rainer Schlosser, Jan Lemcke, Johann Ukrow, Anna Kazachkova, Nicolas Alder, Leonhard Hennicke, Theo Bardey, Nico Grimm, Luca Kleinschmidt, Philipp Kolbe, Cezary Kujath et al.
Published: 2026-09-24
Categories: cs.LG, cs.AI, stat.ML
arXiv: https://arxiv.org/abs/2609.29466v1

Approximate message passing on factor graphs underlies two dominant families of probabilistic inference algorithms: expectation propagation (EP) and variational message passing (VMP). Both methods approximate the marginal at each factor edge, forcing an iterative round-robin schedule, risking negative-precision messages, and, for VMP, collapsing to point estimates at Dirac-delta factors. We introduce Direct Message Approximation (DMA), which approximates factor-to-variable messages directly rather than the marginal. For normalisable factors, we define a consistency condition (requiring exactness when all other incoming messages are Dirac deltas) to guide message construction. We prove a master theorem (proper messages, any graph) bounding marginal KL from message KL, with three structural corollaries: Dirac-input consistency, no EP-style inner-loop iteration, and no negative-precision messages. Further, we prove a complementary $O(1/r^2)$ guarantee for the inherently improper backward message of the product factor, whose closed-form treatment has resisted prior work. As a concrete instantiation, we derive explicit DMA messages for the product and leaky-ReLU factors and assemble a Bayesian neural network (BNN) inference algorithm with one forward/backward sweep per training example and no gradient learning-rate hyperparameter, validating that the structural guarantees translate to predictive uncertainty that widens in data-sparse regions, including under model mismatch.

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### SWE-Prometheus: Measuring Engineering Governance Improvements in Real-World Repositories

Authors: Jiajun Wu, Leixin Sun, Zihan Tan, Yitao Liu, Shuo Li, Jiaru Qian, Shanghaoran Quan, Chuangxin Zhao, Yangxu Liao, Yang Liu, Bin Chong, Guancheng Wan
Published: 2026-09-24
Categories: cs.AI, cs.SE
arXiv: https://arxiv.org/abs/2609.29465v1

Large language model based coding agents have made substantial progress on repository-level software engineering tasks. Existing repository benchmarks, however, usually start from a human-identified issue and evaluate whether a patch satisfies a functional signal. We present SWE-Prometheus, a benchmark for the broader task of improving repository engineering governance. Each task provides a fixed snapshot and an open-ended objective, requiring the agent to identify risks, prioritize interventions, and verify the resulting changes. SWE-Prometheus evaluates six governance dimensions through paired evidence, clean-environment probes, behavior gates, and two independent teacher ratings of the same evidence. The benchmark contains 60 repositories; ten models are evaluated on a shared 22-repository public subset, where mean Normalized Governance Improvement ranges from 0.0568 to 0.5760 and observed behavior-breakage rates range from 0% to 23%. On a frozen ten-repository batch, a repository-blind template obtains mean NGI 0.272, but its gains concentrate in Tests &amp; CI, Quality Gates, and Documentation; it improves Reproducible Environment and Dependency &amp; Security on none of the repositories. This baseline makes the distinction between adding governance artifacts and producing execution-backed improvements measurable. The no-op condition has median NGI zero and standard deviation 0.073; two teachers agree exactly on 57 of 60 dimension scores for the same no-op evidence. For the two highest conditional-mean systems, common-valid NGI is similar, while full-pool comparisons that include behavior failures favor Kimi-K3. These results show why repository-governance evaluation should report improvement, behavior preservation, evidence quality, and coverage together.

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### AgriCountDINO: Parameter-Efficient Exemplar-Guided Counting and Localization in Agriculture

Authors: Shengjie Guo, Xin Li, Borjana Arsova, Hanno Scharr, Silvio Salvi
Published: 2026-09-24
Categories: cs.CV, cs.AI
arXiv: https://arxiv.org/abs/2609.29460v1

Accurate counting and localization of plants and their organs support phenotyping and yield estimation, yet target appearance, scale, and density vary widely across species and imaging conditions. Exemplar boxes specify the target without category-specific retraining, and point predictions identify the individual instances contributing to the count. We introduce AgriCountDINO, a parameter-efficient exemplar-guided framework for joint counting and localization. It conditions frozen multiscale DINOv3 features on exemplar appearance and size, then progressively decodes them into target points. Missed-object recovery extends supervision to targets overlooked by initial matching, and exemplar-adaptive point NMS filters duplicate predictions according to exemplar scale. With 8.4M trainable parameters, approximately one-tenth of TasselNetV4's, AgriCountDINO achieves a three-shot MAE of 11.92 on the TPC-268 benchmark, reducing counting error by 9.7\% while providing individual target locations. Trained only on TPC-268, it achieves a zero-shot MAE of 14.25 on unseen generic object categories in FSC-147, improving upon the best compared zero-shot method by 6.0\% without target-domain training or fine-tuning.

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### Precise Convergence Speed of Clipped SGD

Authors: David A. R. Robin
Published: 2026-09-24
Categories: cs.LG, math.OC
arXiv: https://arxiv.org/abs/2609.29458v1

We present a tightened convergence analysis of clipped gradient descent on $(L_0, L_1)$-smooth functions, with quantitative constants. Building on the ideas of Koloskova et al (2023), we refactor several case disjunctions to reveal the central role of a control of the bias derived from fundamental properties of $\ell_2$-projection, simplifying proofs. We also extend the domain of validity from $η\leq 1 / (9 β)$ to $η&lt; 1 /β$ where $β= L_0 + c L_1$ for clipping constant $c$, which matches the more traditional analysis of smooth functions. We strengthen the convergence criterion from $\left( \min_{t &lt; T} \mathbb{E}(\lVert \nabla f(x_t) \rVert_2) \right)$ to $\left( \frac{1}{T} \sum_{t &lt; T} \mathbb{E}(\lVert \nabla f(x_t) \rVert_2) \right)$ with matching speed, and lower the final achievable loss from $\mathcal{O}(\min(σ^2/c, σ))$ to the more precise $6 \min(σ^2 /c, 3 σ)$.

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### Industrial Anomaly Detection via Defect-Grounded Reasoning in Visual Latent Space

Authors: Jaron Yeh, Yen-Wei Chang, Jiang Liu, Shao-Yuan Lo
Published: 2026-09-24
Categories: cs.CV
arXiv: https://arxiv.org/abs/2609.29457v1

Industrial anomaly detection (IAD) is evolving beyond conventional detection and localization toward multimodal inspection systems that can describe, explain, and reason about fine-grained defects. Although recent multimodal large language model (MLLM)-based methods improve anomaly understanding through textual reasoning and visual guidance, they face two limitations in fine-grained inspection. First, their visual refinement often requires iteratively revisiting local image regions or augmenting with additional tools. Second, the resulting local defect evidence may not be reliably preserved throughout subsequent reasoning. To address these, we propose Anomaly-LR, a defect-grounded latent reasoning framework that first forms a global understanding of the input and then progressively refines anomaly-relevant representations directly in the visual latent space. We further construct IAD-LR-22K, the first IAD instruction dataset designed for latent reasoning, containing 22,228 image-question instances from 4,523 industrial images, with global textual reasoning traces and region-level visual annotations. Extensive experiments show that Anomaly-LR achieves state-of-the-art performance among comparable-scale methods across multiple IAD benchmarks, without requiring external references or tools. The code and data will be released at https://github.com/Yen666/Anomaly-LR.

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### Dense Coverage, Sparse Refinement: Byte-Constrained Cooperative Perception

Authors: Melih Yazgan, Timon Müller, J. Marius Zöllner
Published: 2026-09-24
Categories: cs.CV
arXiv: https://arxiv.org/abs/2609.29456v1

Collaborative perception improves autonomous perception by sharing intermediate Bird's-Eye-View (BEV) features across connected agents, but dense feature exchange is difficult to deploy under strict Vehicle-to-Everything (V2X) bandwidth limits. Existing efficient methods typically either compress the full feature map uniformly, spending bits on low-value background, or sparsify communication, risking the loss of useful context. We propose a coverage-refinement design for byte-constrained cooperative perception: each agent transmits a highly compressed coarse layer over the full BEV map and allocates the remaining budget to selected high-resolution patches. A Task-Aware Benefit Selector ranks cells by estimated downstream utility, enabling deterministic budgeted refinement and zero-retraining adaptation to changing bandwidth. The receiver reconstructs a dense BEV tensor compatible with standard fusion modules. Experiments on DAIR-V2X and OPV2V show strong accuracy-payload trade-offs at kilobyte-scale budgets. On DAIR-V2X, our method reaches 0.60 AP@0.7 at only 1.87 KB per non-ego agent, compared with 0.52 at 4.61 KB for uniform SimVQ compression. Controlled diagnostics further show that the gain arises from coverage-refinement allocation rather than quantization alone. Code will be published.

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